ARTICLES

1.  Metabolomic profiles differ among unique genotypes of a threatened Caribbean coral.

Lohr KE, Khattri RB, Guingab-Cagmat J, Camp EF, Merritt ME, Garrett TJ, Patterson JT.

Sci Rep. 2019 Apr 15;9(1):6067. doi: 10.1038/s41598-019-42434-0.

PMID: 30988456 [PubMed - in process] Free PMC Article

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2.  Software tool for internal standard based normalization of lipids, and effect of data-processing strategies on resulting values.

Koelmel JP, Cochran JA, Ulmer CZ, Levy AJ, Patterson RE, Olsen BC, Yost RA, Bowden JA, Garrett TJ.

BMC Bioinformatics. 2019 Apr 29;20(1):217. doi: 10.1186/s12859-019-2803-8.

PMID: 31035918 [PubMed - indexed for MEDLINE] Free PMC Article

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3.  A joint analysis of metabolomic profiles associated with muscle mass and strength in Caucasian women.

Zhao Q, Shen H, Su KJ, Tian Q, Zhao LJ, Qiu C, Garrett TJ, Liu J, Kakhniashvili D, Deng HW.

Aging (Albany NY). 2018 Oct 14;10(10):2624-2635. doi: 10.18632/aging.101574.

PMID: 30318485 [PubMed - in process] Free PMC Article

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4.  Metabolomic profiles associated with bone mineral density in US Caucasian women.

Zhao Q, Shen H, Su KJ, Zhang JG, Tian Q, Zhao LJ, Qiu C, Zhang Q, Garrett TJ, Liu J, Deng HW.

Nutr Metab (Lond). 2018 Aug 10;15:57. doi: 10.1186/s12986-018-0296-5. eCollection 2018.

PMID: 30116286 [PubMed] Free PMC Article

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5.  MPTAC Determines APP Fragmentation via Sensing Sulfur Amino Acid Catabolism.

Suganuma T, Swanson SK, Gogol M, Garrett TJ, Conkright-Fincham J, Florens L, Washburn MP, Workman JL.

Cell Rep. 2018 Aug 7;24(6):1585-1596. doi: 10.1016/j.celrep.2018.07.013.

PMID: 30089268 [PubMed - in process] Free Article

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6.  Pioglitazone improves hepatic mitochondrial function in a mouse model of nonalcoholic steatohepatitis.

Kalavalapalli S, Bril F, Koelmel JP, Abdo K, Guingab J, Andrews P, Li WY, Jose D, Yost RA, Frye RF, Garrett TJ, Cusi K, Sunny NE.

Am J Physiol Endocrinol Metab. 2018 Aug 1;315(2):E163-E173. doi: 10.1152/ajpendo.00023.2018. Epub 2018 Apr 10.

PMID: 29634314 [PubMed - indexed for MEDLINE] Free PMC Article

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7.  Examining heat treatment for stabilization of the lipidome.

Koelmel JP, Jones CM, Ulmer CZ, Garrett TJ, Yost RA, Schock TB, Bowden JA.

Bioanalysis. 2018 Mar 1;10(5):291-305. doi: 10.4155/bio-2017-0209. Epub 2018 Feb 16.

PMID: 29451398 [PubMed - indexed for MEDLINE] Free Article

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8.  Metabolomics Based Identification of SIRT5 and Protein Kinase C Epsilon Regulated Pathways in Brain.

Koronowski KB, Khoury N, Morris-Blanco KC, Stradecki-Cohan HM, Garrett TJ, Perez-Pinzon MA.

Front Neurosci. 2018 Jan 30;12:32. doi: 10.3389/fnins.2018.00032. eCollection 2018.

PMID: 29440987 [PubMed] Free PMC Article

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9.  Harmonizing lipidomics: NIST interlaboratory comparison exercise for lipidomics using SRM 1950-Metabolites in Frozen Human Plasma.

Bowden JA, Heckert A, Ulmer CZ, Jones CM, Koelmel JP, Abdullah L, Ahonen L, Alnouti Y, Armando AM, Asara JM, Bamba T, Barr JR, Bergquist J, Borchers CH, Brandsma J, Breitkopf SB, Cajka T, Cazenave-Gassiot A, Checa A, Cinel MA, Colas RA, Cremers S, Dennis EA, Evans JE, Fauland A, Fiehn O, Gardner MS, Garrett TJ, Gotlinger KH, Han J, Huang Y, Neo AH, Hyötyläinen T, Izumi Y, Jiang H, Jiang H, Jiang J, Kachman M, Kiyonami R, Klavins K, Klose C, Köfeler HC, Kolmert J, Koal T, Koster G, Kuklenyik Z, Kurland IJ, Leadley M, Lin K, Maddipati KR, McDougall D, Meikle PJ, Mellett NA, Monnin C, Moseley MA, Nandakumar R, Oresic M, Patterson R, Peake D, Pierce JS, Post M, Postle AD, Pugh R, Qiu Y, Quehenberger O, Ramrup P, Rees J, Rembiesa B, Reynaud D, Roth MR, Sales S, Schuhmann K, Schwartzman ML, Serhan CN, Shevchenko A, Somerville SE, St John-Williams L, Surma MA, Takeda H, Thakare R, Thompson JW, Torta F, Triebl A, Trötzmüller M, Ubhayasekera SJK, Vuckovic D, Weir JM, Welti R, Wenk MR, Wheelock CE, Yao L, Yuan M, Zhao XH, Zhou S.

J Lipid Res. 2017 Dec;58(12):2275-2288. doi: 10.1194/jlr.M079012. Epub 2017 Oct 6.

PMID: 28986437 [PubMed - indexed for MEDLINE] Free PMC Article

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10.  Comparison of global metabolite extraction strategies for soybeans using UHPLC-HRMS.

Mahmud I, Sternberg S, Williams M, Garrett TJ.

Anal Bioanal Chem. 2017 Oct;409(26):6173-6180. doi: 10.1007/s00216-017-0557-6. Epub 2017 Aug 26.

PMID: 28844081 [PubMed - indexed for MEDLINE] Free PMC Article

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11.  Untargeted metabolomic analysis in naturally occurring canine diabetes mellitus identifies similarities to human Type 1 Diabetes.

O'Kell AL, Garrett TJ, Wasserfall C, Atkinson MA.

Sci Rep. 2017 Aug 25;7(1):9467. doi: 10.1038/s41598-017-09908-5.

PMID: 28842637 [PubMed - indexed for MEDLINE] Free PMC Article

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12.  Metabolomic Evaluation of the Consequences of Plasma Cystathionine Elevation in Adults with Stable Angina Pectoris.

DeRatt BN, Ralat MA, Lysne V, Tayyari F, Dhar I, Edison AS, Garrett TJ, Midttun Ø, Ueland PM, Nygård OK, Gregory JF 3rd.

J Nutr. 2017 Sep;147(9):1658-1668. doi: 10.3945/jn.117.254029. Epub 2017 Aug 9.

PMID: 28794210 [PubMed - indexed for MEDLINE] Free PMC Article

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13.  LipidMatch: an automated workflow for rule-based lipid identification using untargeted high-resolution tandem mass spectrometry data.

Koelmel JP, Kroeger NM, Ulmer CZ, Bowden JA, Patterson RE, Cochran JA, Beecher CWW, Garrett TJ, Yost RA.

BMC Bioinformatics. 2017 Jul 10;18(1):331. doi: 10.1186/s12859-017-1744-3.

PMID: 28693421 [PubMed - indexed for MEDLINE] Free PMC Article

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14.  A Robust Lipidomics Workflow for Mammalian Cells, Plasma, and Tissue Using Liquid-Chromatography High-Resolution Tandem Mass Spectrometry.

Ulmer CZ, Patterson RE, Koelmel JP, Garrett TJ, Yost RA.

Methods Mol Biol. 2017;1609:91-106. doi: 10.1007/978-1-4939-6996-8_10.

PMID: 28660577 [PubMed - indexed for MEDLINE] Free PMC Article

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15.  Omega-6: Omega-3 PUFA Ratio, Pain, Functioning, and Distress in Adults With Knee Pain.

Sibille KT, King C, Garrett TJ, Glover TL, Zhang H, Chen H, Reddy D, Goodin BR, Sotolongo A, Petrov ME, Cruz-Almeida Y, Herbert M, Bartley EJ, Edberg JC, Staud R, Redden DT, Bradley LA, Fillingim RB.

Clin J Pain. 2018 Feb;34(2):182-189. doi: 10.1097/AJP.0000000000000517.

PMID: 28542024 [PubMed - indexed for MEDLINE] Free PMC Article

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16.  Targeting resolution of neuroinflammation after ischemic stroke with a lipoxin A<sub>4</sub> analog: Protective mechanisms and long-term effects on neurological recovery.

Hawkins KE, DeMars KM, Alexander JC, de Leon LG, Pacheco SC, Graves C, Yang C, McCrea AO, Frankowski JC, Garrett TJ, Febo M, Candelario-Jalil E.

Brain Behav. 2017 Apr 12;7(5):e00688. doi: 10.1002/brb3.688. eCollection 2017 May.

PMID: 28523230 [PubMed - indexed for MEDLINE] Free PMC Article

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17.  Expanding Lipidome Coverage Using LC-MS/MS Data-Dependent Acquisition with Automated Exclusion List Generation.

Koelmel JP, Kroeger NM, Gill EL, Ulmer CZ, Bowden JA, Patterson RE, Yost RA, Garrett TJ.

J Am Soc Mass Spectrom. 2017 May;28(5):908-917. doi: 10.1007/s13361-017-1608-0. Epub 2017 Mar 6.

PMID: 28265968 [PubMed] Free PMC Article

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18.  Presence of arachidonoyl-carnitine is associated with adverse cardiometabolic responses in hypertensive patients treated with atenolol.

Weng L, Gong Y, Culver J, Gardell SJ, Petucci C, Morse AM, Frye RF, Turner ST, Chapman A, Boerwinkle E, Gums J, Beitelshees AL, Borum PR, Johnson JA, Garrett TJ, McIntyre LM, Cooper-DeHoff RM.

Metabolomics. 2016 Oct;12(10). pii: 160. doi: 10.1007/s11306-016-1098-2. Epub 2016 Sep 15.

PMID: 28217401 [PubMed] Free PMC Article

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19.  Study of early stage non-small-cell lung cancer using Orbitrap-based global serum metabolomics.

Klupczynska A, Dereziński P, Garrett TJ, Rubio VY, Dyszkiewicz W, Kasprzyk M, Kokot ZJ.

J Cancer Res Clin Oncol. 2017 Apr;143(4):649-659. doi: 10.1007/s00432-017-2347-0. Epub 2017 Feb 6.

PMID: 28168355 [PubMed - indexed for MEDLINE] Free PMC Article

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20.  <sup>13</sup>C Metabolomics: NMR and IROA for Unknown Identification.

Clendinen CS, Stupp GS, Wang B, Garrett TJ, Edison AS.

Curr Metabolomics. 2016 Aug;4(2):116-120. doi: 10.2174/2213235X04666160407212156.

PMID: 28090435 [PubMed] Free PMC Article

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21.  LipidPioneer : A Comprehensive User-Generated Exact Mass Template for Lipidomics.

Ulmer CZ, Koelmel JP, Ragland JM, Garrett TJ, Bowden JA.

J Am Soc Mass Spectrom. 2017 Mar;28(3):562-565. doi: 10.1007/s13361-016-1579-6. Epub 2017 Jan 10.

PMID: 28074328 [PubMed - indexed for MEDLINE] Free PMC Article

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22.  Precast Gelatin-Based Molds for Tissue Embedding Compatible with Mass Spectrometry Imaging.

Gill EL, Yost RA, Vedam-Mai V, Garrett TJ.

Anal Chem. 2017 Jan 3;89(1):576-580. doi: 10.1021/acs.analchem.6b04185. Epub 2016 Dec 20.

PMID: 27935272 [PubMed - indexed for MEDLINE] Free PMC Article

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23.  A Targeted Metabolomics Assay to Measure Eight Purines in the Diet of Common Bottlenose Dolphins, <i>Tursiops truncatus</i>.

Ardente AJ, Garrett TJ, Wells RS, Walsh M, Smith CR, Colee J, Hill RC.

J Chromatogr Sep Tech. 2016 Oct;7(5). pii: 334. Epub 2016 Sep 19.

PMID: 27904786 [PubMed] Free PMC Article

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24.  A Genetic Response Score for Hydrochlorothiazide Use: Insights From Genomics and Metabolomics Integration.

Shahin MH, Gong Y, McDonough CW, Rotroff DM, Beitelshees AL, Garrett TJ, Gums JG, Motsinger-Reif A, Chapman AB, Turner ST, Boerwinkle E, Frye RF, Fiehn O, Cooper-DeHoff RM, Kaddurah-Daouk R, Johnson JA.

Hypertension. 2016 Sep;68(3):621-9. doi: 10.1161/HYPERTENSIONAHA.116.07328. Epub 2016 Jul 5.

PMID: 27381900 [PubMed - indexed for MEDLINE] Free PMC Article

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25.  Skeletal muscle fiber analysis by atmospheric pressure scanning microprobe matrix-assisted laser desorption/ionization mass spectrometric imaging at high mass and high spatial resolution.

Tsai YH, Bhandari DR, Garrett TJ, Carter CS, Spengler B, Yost RA.

Proteomics. 2016 Jun;16(11-12):1822-4. doi: 10.1002/pmic.201500536.

PMID: 27198224 [PubMed - indexed for MEDLINE] Free PMC Article

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26.  An Integrated Metabolomic and Microbiome Analysis Identified Specific Gut Microbiota Associated with Fecal Cholesterol and Coprostanol in Clostridium difficile Infection.

Antharam VC, McEwen DC, Garrett TJ, Dossey AT, Li EC, Kozlov AN, Mesbah Z, Wang GP.

PLoS One. 2016 Feb 12;11(2):e0148824. doi: 10.1371/journal.pone.0148824. eCollection 2016.

PMID: 26871580 [PubMed - indexed for MEDLINE] Free PMC Article

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27.  Isotopic Ratio Outlier Analysis of the S. cerevisiae Metabolome Using Accurate Mass Gas Chromatography/Time-of-Flight Mass Spectrometry: A New Method for Discovery.

Qiu Y, Moir R, Willis I, Beecher C, Tsai YH, Garrett TJ, Yost RA, Kurland IJ.

Anal Chem. 2016 Mar 1;88(5):2747-54. doi: 10.1021/acs.analchem.5b04263. Epub 2016 Feb 17.

PMID: 26820234 [PubMed - indexed for MEDLINE] Free PMC Article

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28.  Lipotoxicity in steatohepatitis occurs despite an increase in tricarboxylic acid cycle activity.

Patterson RE, Kalavalapalli S, Williams CM, Nautiyal M, Mathew JT, Martinez J, Reinhard MK, McDougall DJ, Rocca JR, Yost RA, Cusi K, Garrett TJ, Sunny NE.

Am J Physiol Endocrinol Metab. 2016 Apr 1;310(7):E484-94. doi: 10.1152/ajpendo.00492.2015. Epub 2016 Jan 26.

PMID: 26814015 [PubMed - indexed for MEDLINE] Free PMC Article

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29.  Liquid Chromatography-Mass Spectrometry Metabolic and Lipidomic Sample Preparation Workflow for Suspension-Cultured Mammalian Cells using Jurkat T lymphocyte Cells.

Ulmer CZ, Yost RA, Chen J, Mathews CE, Garrett TJ.

J Proteomics Bioinform. 2015 Jun;8(6):126-132.

PMID: 26401069 [PubMed] Free PMC Article

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30.  Comparison of blood plasma sample preparation methods for combined LC-MS lipidomics and metabolomics.

Patterson RE, Ducrocq AJ, McDougall DJ, Garrett TJ, Yost RA.

J Chromatogr B Analyt Technol Biomed Life Sci. 2015 Oct 1;1002:260-6. doi: 10.1016/j.jchromb.2015.08.018. Epub 2015 Aug 28.

PMID: 26343017 [PubMed - indexed for MEDLINE] Free PMC Article

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31.  Profiling the metabolome changes caused by cranberry procyanidins in plasma of female rats using (1) H NMR and UHPLC-Q-Orbitrap-HRMS global metabolomics approaches.

Liu H, Garrett TJ, Tayyari F, Gu L.

Mol Nutr Food Res. 2015 Nov;59(11):2107-18. doi: 10.1002/mnfr.201500236. Epub 2015 Sep 15.

PMID: 26264887 [PubMed - indexed for MEDLINE] Free PMC Article

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32.  Cross-talk between branched-chain amino acids and hepatic mitochondria is compromised in nonalcoholic fatty liver disease.

Sunny NE, Kalavalapalli S, Bril F, Garrett TJ, Nautiyal M, Mathew JT, Williams CM, Cusi K.

Am J Physiol Endocrinol Metab. 2015 Aug 15;309(4):E311-9. doi: 10.1152/ajpendo.00161.2015. Epub 2015 Jun 9.

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